PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_4BL_5091DE58E.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family HSF
Protein Properties Length: 105aa    MW: 12474.9 Da    PI: 10.4339
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_4BL_5091DE58E.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind64.91.8e-2015441103
                            HHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXXXX CS
           HSF_DNA-bind  41 LpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkkse 103
                            Lp +Fkhsnf+SFvRQLn+YgF+kv+ ++         weF+h sF +g+++ll +i r++s+
  Traes_4BL_5091DE58E.1   1 LPAHFKHSNFSSFVRQLNTYGFRKVDPDR---------WEFAHASFLRGQTHLLPRIVRRRST 54 
                            799***********************999.........********************99876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF004471.2E-16151IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS004340125IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.4E-19151IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-10151IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.67E-17151IPR011991Winged helix-turn-helix DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
LPAHFKHSNF SSFVRQLNTY GFRKVDPDRW EFAHASFLRG QTHLLPRIVR RRSTTRPSKD  60
DNEGEDEDTS STMLAMEVVR LKQEQRATED RLATMWRRVQ DAERQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG6703061e-113HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003571145.11e-47PREDICTED: heat stress transcription factor C-2a-like
SwissprotQ0DBL61e-44HFC2B_ORYSJ; Heat stress transcription factor C-2b
TrEMBLW5E3C43e-73W5E3C4_WHEAT; Uncharacterized protein
STRINGBRADI3G08870.13e-47(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44713470
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24520.18e-31heat shock transcription factor C1
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]